Difference between revisions of "Gbrowse on 4.0.2CD"
From Knoppix Documentation Wiki
(link back to gmod) |
(apache restart) |
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make && | make && | ||
make install || die "unable to install gbrowse" 5 | make install || die "unable to install gbrowse" 5 | ||
− | )</nowiki></pre> | + | ) |
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+ | /etc/init.d/apache restart | ||
+ | |||
+ | |||
+ | </nowiki></pre> | ||
+ | Point your browser to http://localhost/gbrowse |
Revision as of 22:07, 13 October 2005
The Generic Genome Browser, gbrowse, is a combination of database and interactive web page for manipulating and displaying annotations on genomes.
Code to install a basic gbrowse environment
Prerequisits: a persistent disk image of about 300 MB. I used 500 MB just to be sure I had enough room for temporary files and the like.
#!/bin/bash set -x die () { echo "$1" exit $2 } apt-get update || die "unable to apt-get" 1 apt-get -y install libcgi-perl libgd-gd2-perl libdbi-perl \ libdbd-mysql-perl libmd5-perl libtext-shellwords-perl bioperl || die "unable to install " 2 cd /root wget 'http://umn.dl.sourceforge.net/sourceforge/gmod/Generic-Genome-Browser-1.62.tar.gz' || die "unable to wget" 3 tar -xzvf Generic-Genome-Browser-1.62.tar.gz || die "unable to untar" 4 ( cd Generic-Genome-Browser-1.62/ && perl Makefile.PL CONF=/etc/apache/ HTDOCS=/var/www/ CGIBIN=/usr/lib/cgi-bin/ && make && make install || die "unable to install gbrowse" 5 ) /etc/init.d/apache restart
Point your browser to http://localhost/gbrowse